Run a county scenario (adjustable for Shiny interface)

Source: R/RunCounty_Scenario.R

Run a county scenario (adjustable for Shiny interface)

RunOneCounty_scen_input(
  county1,
  county.dt,
  doses.dt,
  k_ukgrowth = 1,
  k_brgrowth = 1,
  k_ingrowth = 1,
  k_max_open = 0.75,
  vaccine_uptake = NULL,
  vaccine_dosing = NULL,
  remote = FALSE,
  writedir = NULL
)

Arguments

county1

a character string giving the name of the county
county.dt

a data.table object returned from GetCountyData
doses.dt

a data.table object returned from GetDosesData
k_ukgrowth

growth rate of UK variant (B.1.1.7)
k_brgrowth

growth rate of BR variant (P.1)
k_ingrowth

growth rate of IN variant (B.1.617.2)
k_max_open

percentage of pre-pandemic activity after reopening (scales contact rate)
vaccine_uptake

a numeric vector with 3 values, for vaccine uptake in age groups 12-15, 16-64, and 65+
vaccine_dosing

a named list that requires specific input, see section vaccine_dosing, or NULL for no adjustment of doses available
remote

a logical value, if TRUE download all data from remotes, otherwise use local data
writedir

a character string giving a directory to write to, it should only be used if remote is TRUE. This assumes the directory whose path is given already exists.

vaccine_dosing

This is a named list that requires the following elements

  • vaccine_dosing_jjdaily increase in J&J vaccine delivery

  • vaccine_dosing_mrnadaily increase in mRNA vaccines delivery

  • vaccine_dosing_mrna_maxincrease over baseline in maximum number of doses per day for mRNA vaccines

  • vaccine_dosing_jj_maxincrease over baseline in maximum number of doses per day for J&J vaccines