All functions

ConvertNegative()

Set negative values to 2

CreateOverview()

Create overview from results

GenerateEmail()

Generate email from results

GetAdmits()

Get information on hospital admissions

GetCountyData()

Get data for counties

GetCountyInputs()

Get input data for county

GetCountyInputs_scen()

Get county inputs for scenarios

GetCountySheets()

Get xlsx sheet data for county

GetDosesData()

Get doses data

GetResults_scen()

Get results of running a scenario

GetStateData()

Get state data

ModifyCountyInputs()

Get input data for county

ReadCsvAWS()

Get data from AWS

ReadSFDoses()

Read SF doses from AWS

RtMap()

Create Rt map results

RunOneCounty()

Run a county

RunOneCounty_scen()

Run a county scenario

RunOneCounty_scen_input()

Run a county scenario (adjustable for Shiny interface)

SFDosesToAWS()

Upload SF doses to AWS

Scenario()

Run a scenario