ConvertNegative()
Set negative values to 2
CreateOverview()
Create overview from results
GenerateEmail()
Generate email from results
GetAdmits()
Get information on hospital admissions
GetCountyData()
Get data for counties
GetCountyInputs()
Get input data for county
GetCountyInputs_scen()
Get county inputs for scenarios
GetCountySheets()
Get xlsx sheet data for county
GetDosesData()
Get doses data
GetResults_scen()
Get results of running a scenario
GetStateData()
Get state data
ModifyCountyInputs()
ReadCsvAWS()
Get data from AWS
ReadSFDoses()
Read SF doses from AWS
RtMap()
Create Rt map results
RunOneCounty()
Run a county
RunOneCounty_scen()
Run a county scenario
RunOneCounty_scen_input()
Run a county scenario (adjustable for Shiny interface)
SFDosesToAWS()
Upload SF doses to AWS
Scenario()
Run a scenario